Table 2 Pseudo periodic repeats of LPXA_ECOLI (matrix:blosum62, gap penalty: -4)
From: Finding the region of pseudo-periodic tandem repeats in biological sequences
Unit | Pseudo-periodic unit | Length | Similarity with previous unit |
|---|---|---|---|
1 | MIDKSAFVHPTAIVEEGA | 18 | Â |
2 | SIGANAHIGPFCIVGPHV | 18 | 14 |
3 | EIGEGTVLKSHVVVNGHT | 18 | 16 |
4 | KIGRDNEIYQFASI | 14 | -7 |
5 | GEVNQDLKYAGEPTR | 15 | -3 |
6 | VEIGDRNRIRESVTI | 15 | 2 |
7 | HRGTVQGGGL | 10 | -14 |
8 | TKVGSDNLLMINAHIAHD | 18 | -24 |
9 | CTVGNRCILANNATLAGH | 18 | 20 |
10 | VSVDDFAIIGGMTAVHQF | 18 | 4 |
11 | CIIGAHVMVGGCSGV | 15 | 4 |