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Table 4 Column scores on DIRMBASE 1.

From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

Method (DNA)

REF1

REF2

REF3

REF4

Total

DIALIGN-TX

74.39

69.03

71.57

75.11

72.52

DIALIGN-T 0.2.2

29.60--

28.63--

35.51--

35.85--

32.40--

DIALIGN 2.2

69.950

68.190

71.250

72.480

70.47-

CLUSTAL W2

00.00--

00.00--

02.19--

04.99--

01.80--

T-COFFEE 5.56

00.00--

00.18--

04.01--

08.44--

03.16--

POA V2

05.63--

07.32--

04.12--

06.81--

05.97--

MAFFT 6.240 L-INSi

21.45--

11.93--

16.02--

22.30--

17.93--

MAFFT 6.240 E-INSi

40.28--

41.99--

45.77--

51.01--

44.76--

MUSCLE 3.7

14.18--

16.18--

19.62--

30.43--

20.10--

PROBCONSRNA 1.10

00.73--

00.05--

01.34--

04.31--

01.61--

  1. Average column scores (CS) of the benchmarked programs on the core blocks of DIRM-BASE 1. The symbols are analogous to Table 1.