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Table 9 Column scores on BRAliBase II

From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

Method (DNA)

G2In

rRNA

SRP

tRNA

U5

Total

DIALIGN-TX 1.0

60.85

84.33

70.95

68.05

62.71

69.03

DIALIGN-T 0.2.2

36.51--

50.00--

42.34--

52.01--

50.34--

46.43--

DIALIGN 2.2

60.900

81.08--

68.53--

67.590

60.11-

67.29--

CLUSTAL W2

61.240

86.720

76.61++

76.20++

65.11+

72.85++

T-COFFEE 5.56

60.240

82.56-

71.630

69.230

62.930

69.010

POA V2

55.21--

80.38--

73.77++

66.030

61.630

67.12--

MAFFT 6.240 L-INSi

65.23+

87.49+

76.75++

84.59++

68.46++

76.25++

MAFFT 6.240 E-INSi

63.84+

87.34+

76.59++

83.29++

65.71++

75.04++

MUSCLE 3.7

63.200

87.97+

76.57++

78.01++

64.34+

73.64++

PROBCONSRNA 1.10

68.70 ++

88.60 ++

77.55 ++

85.46 ++

71.73 ++

78.19 ++

  1. Average column scores (CS) of the benchmarked programs on BRAliBase II. The symbols are analogous to Table 1.