Table 1 Description of sequences used in this work that served to assess the performance of different aspects of AlignMiner; sequences that have been aligned together have a common average identity and similarity values.
Name | Taxon | Organism | Isoform | AC# (nt) | Average identity | AC# (amino acid) | Average similarity |
|---|---|---|---|---|---|---|---|
GS1 | Plant | Arabidopsis thaliana | AtGS1 isoform 1 | AF419608 | tity | Q56WN1 | ity |
GS1 | Plant | Arabidopsis thaliana | AtGS1 isoform 2 | AY091101 | Q8LCE1 | ||
GS1 | Plant | Arabidopsis thaliana | AtGS1 isoform 3 | AY088312 | 70% | Q9LVI8 | 89% |
GS1 | Plant | Arabidopsis thaliana | AtGS1 isoform 4 | AY059932 | Q9FMD9 | ||
GS1 | Plant | Arabidopsis thaliana | AtGS1 isoform 5 | AK118005 | Q86XW5 | ||
GS1 | Plant | Oryza sativa | OsGS1 isoform 1 | AB037664 | Q0DXS9 | ||
GS1 | Plant | Oryza sativa | OsGS1 isoform 2 | AB180688 | 62% | Q0J9E0 | 82% |
GS1 | Plant | Oryza sativa | OsGS1 isoform 3 | AK243037 | Q10DZ8 | ||
GS1 | Plant | Oryza sativa | OsGS1 isoform 4 | AB180689 | Q10PS4 | ||
MDH-1 | Mammalian | Mus musculus | MmMDHm | NM_008618 | NP_032644 | ||
MDH-1 | Mammalian | Sus scofra | ScMDHm | MN_213874 | NP_999039 | ||
MDH-1 | Mammalian | Rattus norvegicus | RnMDHm | AF093773 | 88% | AAC64180 | 95% |
MDH-1 | Mammalian | Homo sapiens | HsMDHm | NM_005917 | NP_005908 | ||
MDH-1 | Mammalian | Equs caballus | EcMDHm | XM_001494265 | XP_001494315 | ||
MDH-1 | Plant | Arabidopsis thaliana | AtMDHp | AF339684 | AAK00366 | ||
MDH-1 | Plant | Prunus persica | PpMDHp | AF367442 | AAL11502 | ||
MDH-1 | Plant | Vitis vinifera | VvMDHp | AF195869 | 71% | AAF69802 | 87% |
MDH-1 | Plant | Oryza sativa | OsMDHp | AF444195 | AAM00435 | ||
MDH-1 | Plant | Lycopersicum esculentum | LsMDHp | AY725474 | AAV29198 | ||
SAM-1 | Plant | Arabidopsis thaliana | AtSAM | AF325061 | AAG40413 | ||
SAM-1 | Plant | Triticum aestivum | TaSAM | EU399630 | ABY85789 | ||
SAM-1 | Plant | Zea mays | ZmSAM | EU960496 | 65% | ACG32614 | 92% |
SAM-1 | Plant | Gossypum hirsutum | GhSAM | EF643509 | ABS52575 | ||
GDC-H | Plant | Pinus pinaster | Photosynthetic | ongoing | NA | ||
GDC-H | Plant | Pinus pinaster | Non-photosynthetic | ongoing | NA |