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Table 2 Benchmark for prokaryotes – Archaea & Bacteria domains

From: Alignment-free phylogeny of whole genomes using underlying subwords

Accession No.

Domain

Organism

Size

BA000002

archaea

aeropyrum pernix str. K1

1.7 Mbp

AE000782

archaea

archaeoglobus fulgidus str. DSM 4304

2.2 Mbp

AE009439

archaea

methanopyrus kandleri str. AV19

1.7 Mbp

AE010299

archaea

methanosarcina acetivorans str. C2A

5.8 Mbp

AE009441

archaea

pyrobaculum aerophilum str. IM2

2.3 Mbp

AL096836

archaea

pyrococcus abyssi

1.8 Mbp

AE009950

archaea

pyrococcus furiosus str. DSM 3638

1.9 Mbp

AE000520

archaea

treponema pallidum sp. pall. str. Nichols

1.2 Mbp

AE017225

bacteria

bacillus anthracis str. Sterne

5.3 Mbp

AL009126

bacteria

bacillus subtilis subsp. subtilis str. 168

4.3 Mbp

AE013218

bacteria

buchnera aphidicola str. Sg

651 kbp

AL111168

bacteria

campylobacter jejuni sp. jej. str. NCTC 11168

1.7 Mbp

AE002160

bacteria

chlamydia muridarum str. MoPn/Wiess-Nigg

1.1 Mbp

AM884176

bacteria

chlamydia trachomatis str. L2/434/Bu

1.1 Mbp

AE016828

bacteria

coxiella burnetii str. RSA 493

2.0 Mbp

AE017285

bacteria

desulfovibrio vulgaris sp. vulg. str. Hildenb.

3.6 Mbp

L42023

bacteria

haemophilus influenzae str. Rd KW20

1.9 Mbp

CP001037

bacteria

nostoc punctiforme str. PCC 73102

8.4 Mbp

  1. Prokaryotic taxa used in our experiments, divided by domain. For each entity, we list the accession number in the NCBI genome database, the complete name and strain, and the genome size.