From: Space-efficient and exact de Bruijn graph representation based on a Bloom filter
Assembly | Minia | ABySS | Velvet | |
---|---|---|---|---|
Value of k chosen | 47 | 31 | 31 | 31 |
Number of contigs (k) | 48.5 | 56.1 | 51.9 | 45.6 |
Longest contig (kbp) | 28.9 | 26.5 | 30.0 | 27.9 |
Contig NG50 (kbp) | 2.8 | 1.7 | 2.0 | 2.3 |
Large misassemblies | 11 | 3 | 20 | 385 |
Local misassemblies | 25 | 27 | 158 | 867 |
Coverage (%) | 92.4 | 81.9 | 82.2 | 84.4 |
Unaligned contigs length (kbp) | 33.1 | 13.5 | 23.6 | 564.5 |