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Table 3 de novo human genome chromosome 14 assemblies

From: Space-efficient and exact de Bruijn graph representation based on a Bloom filter

Assembly

Minia

 

ABySS

Velvet

Value of k chosen

47

31

31

31

Number of contigs (k)

48.5

56.1

51.9

45.6

Longest contig (kbp)

28.9

26.5

30.0

27.9

Contig NG50 (kbp)

2.8

1.7

2.0

2.3

Large misassemblies

11

3

20

385

Local misassemblies

25

27

158

867

Coverage (%)

92.4

81.9

82.2

84.4

Unaligned contigs length (kbp)

33.1

13.5

23.6

564.5

  1. de novo human genome chromosome 14 assemblies reported by our assembler (Minia), compared to Velvet and ABySS assemblies from the GAGE benchmark. QUAST was used to evaluate all three assemblers.