Skip to main content

Table 5 Terms highly enriched in BicPAM’s biclusters

From: BicPAM: Pattern-based biclustering for biomedical data analysis

Dataset

ID

Terms

Bicluster with bestp-value

♯Genes

dlblc

Dl1

translational elongation; cytosolic part; translational initiation

4.49E-5

81

 

Dl2

Golgi apparatus; MHC protein complex

5.40E-5

83

 

Dl3

defense response; receptor activity; single organism signaling; vacuole; cell communication

4.91-5

162

 

Dl4

immune response; response to interferon-gamma

1.06E-4

58

 

Dl5

immune system process

1.27E-4

52

 

Dl6

response to interferon-gamma; cellular response to chemical stimulus; response to cytokine stimulus

0.001

60

 

Dl7

membrane-enclosed lumen; cell division; cell cycle process

2.92E-12

81

 

Dl8

small molecule binding; catalytic activity; cell cycle process

6.14E-8

108

hughes

H1

mitochondrion organization; organellar ribosome; mitochondrial matrix; mitochondrial translation

2.70E-39

416

 

H2

cell periphery; cell wall constituent; oxidoreductase activity; cell wall organization; sexual sporulation

1.73E-4

370

 

H3

ribonucleoprotein complex biogenesis; nucleus

3.61E-30

426

 

H4

cellular amino acid metabolic/biosynthetic process; carboxylic acid metabolic/biosynthetic process

1.3E-25

581

 

H5

organonitrogen compound metabolic process; sulfur compound metabolic process

1.62E-4

504

 

H6

macromolecular complex; intracell. non-membrane-bounded organelle; membrane-enclosed lumen

4.80E-14

512

gasch

G1

nitrogen compound metabolic proc.; carboxylic/organic amino acid processes; structural cytoskeleton

1.84E-16

434

 

G2

cellular carbohydrate metabolic process; cytoplasm

2.01E-7

265

 

G3

generation of precursor metabolites and energy; tricarboxylic acid cycle

1.16E-14

954

 

G4

endomembrane system; retrotransposon nucleocapsid; pore; viral procapsid maturation

4.34E-6

102

 

G5

nucleolus; ncRNA metabolic process

1.03E-61

611

 

G6

intracell. non-membrane-bounded organelle; structural molecule activity

5.33E-76

293

 

G7

cytosolic part; ribosomal subunit

1.61E-88

460

 

G8

membrane-enclosed lumen; nuclear lumen; intracell. organelle lumen

1.17E-47

263

 

G9

mitochondrion organization; mitochondrial part; cytoplasmic part; protein complex biogenesis

2.06E-26

592

 

G10

cellular response to oxidative stress; generation of precursor metabolites and energy

2.37E-4

296

 

G11

binding; nuclear part; preribosome

2.87E-11

508

 

G12

cellular process involved in reproduction

0.001

435

 

G13

macromolecular complex; cell part; structural molecule activity

6.05E-29

1442

 

G14

vacuolar transport; chromosome

5.09E-7

606

 

G15

regulation of cellular (macromolecule) biosynthetic process; protein modification process

2.28E-13

1019

 

G16

organic substance catabolic process; carbohydrate metabolic process; cytoplasm

1.02E-15

648

 

G17

ribonucleoprotein complex biogenesis (general)

1.08E-94

784