Figure 4
From: A simple data-adaptive probabilistic variant calling model
Statistical performance measures on simulated data sets. The data adaptive model implemented in haarz was compared to SAMtools and GATK in terms of recall and positive predictive value. SNV calling was performed on twelve different data sets varying in the content of the variant allele (20% and 50%) as well as the simulated coverage (10-200). In all of these scenarios the data adaptive model is at par with both alternative callers.