SNPs detection by eBWT positional clustering

Table 3 Sensitivity and precision of the ebwt2snp pipeline

Cov	SEN (%)	PREC (%)	TP	FP	FN	Non-isol	Non isol (%)
3	84.34	45.19	317,490	385,060	58,938	45,363	65.34
4	83.18	50.67	313,131	304,811	63,297	44,491	64.08
5	80.53	60.36	303,130	199,042	73,298	42,394	61.06
6	77.94	66.62	293,385	146,972	83,043	40,403	58.20
7	75.22	70.93	283,145	116,042	93,283	38,405	55.32
8	72.32	73.99	272,223	95,675	104,205	36,427	52.47
9	69.18	76.33	260,405	80,746	116,023	34,391	49.54
10	65.80	78.16	247,685	69,203	128,743	32,281	46.50
11	59.83	79.82	225,232	56,929	151,196	28,846	41.55
12	55.45	81.21	208,725	48,284	167,703	26,360	37.97

Values are computed using as ground truth the SNPs predicted by a classic aligner-based pipeline

ISSN: 1748-7188