Table 1 Average computation time (in minutes) over 5 replicates for varying dimensions of \(\tilde{\mathbf {X}}^{ G }\), with the dimension of \(\tilde{\mathbf {X}}^{ G }\) being fixed (\(N_{ M }=6\))
From: Fast computation of genome-metagenome interaction effects
\(N_{ G }\) | 50 | 100 | 500 | 1000 | 1500 | 2000 | 3000 | 4000 |
|---|---|---|---|---|---|---|---|---|
\(\rho \)-SICOMORE | 0.01 | 0.01 | 0.02 | 0.03 | 0.03 | 0.04 | 0.05 | 0.06 |
SICOMORE | 0.21 | 0.34 | 0.82 | 0.76 | 0.75 | 0.96 | 0.93 | 1.09 |
MLGL | 0.06 | 0.09 | 3.35 | 0.86 | 3.12 | 4.52 | 8.02 | 24.20 |
GLtree | 0.07 | 0.28 | 0.67 | 3.83 | 11.69 | 26.31 | 88.17 | 210.64 |