From: On an enhancement of RNA probing data using information theory
RNA | Length | Hajdin et al. [8] | Our method | ||||
---|---|---|---|---|---|---|---|
Sens | PPV | Acc | Sens | PPV | Acc | ||
Pre-Q1 riboswitch, B. subtilis | 34 | 100 | 100 | 100 | 100 | 100 | 100 |
Fluoride riboswitch, P. syringae | 66 | 93.8 | 93.8 | 93.8 | 100 | 100 | 100 |
Adenine riboswitch, V. vulnificus | 71 | 100 | 100 | 100 | 100 | 100 | 100 |
tRNA(asp), yeast | 75 | 95.2 | 95.2 | 95.2 | 100 | 100 | 100 |
tRNA(phe), E. coli | 76 | 100 | 84.0 | 91.7 | 100 | 100 | 100 |
TPP riboswitch, E. coli | 79 | 95.5 | 87.5 | 91.4 | 95.6 | 100 | 97.7 |
SARS corona virus pseudoknot | 82 | 84.6 | 88.0 | 86.3 | 97.4 | 84.4 | 90.5 |
cyclic-di-GMP riboswitch, V. cholerae | 97 | 89.3 | 86.2 | 87.7 | 100 | 96.6 | 98.3 |
5S rRNA, E. coli | 120 | 85.7 | 76.9 | 81.2 | 100 | 97.3 | 98.6 |
M-Box riboswitch, B. subtilis | 154 | 87.5 | 91.3 | 89.4 | 89.7 | 97.8 | 93.5 |
P546 domain, bI3 group I intron | 155 | 94.6 | 96.4 | 95.5 | 98.2 | 100 | 99.1 |
Lysine riboswitch, T. maritima | 174 | 87.3 | 88.7 | 88.0 | 94.8 | 100 | 97.3 |
Group I intron, Azoarcus sp. | 214 | 92.1 | 95.1 | 93.6 | 96.5 | 96.5 | 96.5 |
Hepatitis C virus IRES domain | 336 | 92.3 | 96.0 | 94.1 | 98.0 | 97.0 | 97.5 |
Group II intron, O. iheyensis | 412 | 93.2 | 97.6 | 95.4 | 94.4 | 100 | 97.1 |
Group I Intron, T. thermophila | 425 | 93.9 | 91.2 | 92.5 | 96.8 | 92.3 | 94.5 |
5′ domain of 23S rRNA, E. coli | 511 | 97.2 | 76.8 | 86.4 | 98.7 | 83.4 | 90.4 |
5′ domain of 16S rRNA, E. coli | 530 | 93.0 | 83.6 | 88.2 | 97.6 | 89.7 | 93.5 |
Average | 93.0 | 90.4 | 91.6 | 97.6 | 96.4 | 96.9 |